| NO. | GENE | COPIES | FUNCTION | % IDEN | % SIM | P | SCORE | SPECIES MATCH | CONTIG (Orf No) |
| FLAGELLUM BIOSYNTHESIS | |||||||||
| 1 | flgB | 2 | flagellar basal body protein | 31 | 49 | 2.00E-04 | 45 | S. mel, Z. mob | 109(4),138(45) |
| 2 | flgC | 2 | flagellar basal body rod protein | 28 | 43 | 4.00E-04 | 44 | A. tum, Z. mob | 109(5), 138(46) |
| 3 | flgE | 2 | flagellar hook protein | 24 | 54 | 3.00E-27 | 124 | C. cre, V. par | 124(21),138(48) |
| 4 | flgF | 2 | basal body proximal rod protein | 30 | 42 | 1.00E-04 | 39 | C. cre, V. par | 109(8),138(49) |
| 5 | flgG | 2 | basal body rod protein | 42 | 63 | 2.00E-52 | 206 | C. cre, Z. mob | 109(9),138(50) |
| 6 | flgH | 2 | basal body L-ring protein | 30 | 45 | 2.00E-14 | 80 | A. tum, V. par | 109(12),138(51) |
| 7 | flgI | 2 | flagellar P-ring protein | 39 | 54 | 2.00E-34 | 147 | C. cre, V. par | 124(24),138(48) |
| 8 | fliI | 2 | flagellar specific ATP synthase | 36 | 50 | 8.00E-60 | 232 | S. typ, C. cre | 162(80),109(32) |
| 9 | fliF | 2 | basal ring-M protein | 29 | 42 | 3.00E-23 | 110 | Z. mob, C. cre | 162(77),124(1) |
| 10 | fliN | 2 | flagellar motor switch protein | 35 | 58 | 4.00E-05 | 46 | P. aer, S. mel | 102(18),124(35) |
| 11 | fliP | 2 | flagellar biogenesis | 41 | 67 | 2.00E-26 | 120 | P. put, C. cre | 102(20),124(5) |
| 12 | fliQ | 2 | flagellar biogenesis/export | 47 | 66 | 3.00E-11 | 66 | R. sph, B. sub, C. cre | 102(21),109(7) |
| 13 | fliR | 2 | flagellar biogenesis | 33 | 46 | 1.00E-20 | 101 | P. put, C. cre | 102(22),109(23) |
| 14 | flhA | 2 | flagellar assembly | 36 | 55 | 6.00E-95 | 350 | Z. mob, C. cre | 162(20),109(22) |
| 15 | flhB | 2 | flagellar assembly | 42 | 57 | 1.00E-20 | 101 | X. ory, C. cre | 102(230,109(24) |
| CARBON METABOLISM | |||||||||
| 16 | pucB | 2 | light harvesting complex | 94 | 95 | 4.00E-22 | 101 | R. sul, R. sul | 168(56) ,159(5) |
| 17 | pucA | 2 | light harvesting complex | 58 | 72 | 8.00E-12 | 67 | R. sul, R. sul | 168(57),159(5) |
| 18 | crtI | 2 | phytoene desaturase | 21 | 38 | 8.00E-14 | 80 | R. cap, C. ele | 94( ),131(8) |
| 19 | dxs | 2 | Deoxyxylulose- 5- phosphate synthase | 66 | 78 | 0 | 810 | R. cap, R. cap | 166(53),158(38) |
| 20 | cbbA | 2 | Fructose bisphosphate aldolase | 79 | 87 | 1.00E-149 | 529 | Synechocystis sp., S. mel | 193(15),99() |
| 21 | cbbP | 2 | Phosphoribulokinase | 88 | 93 | 1.00E-128 | 458 | R. cap, R. cap | 193(14),99() |
| 22 | cbbF | 2 | Fructose bisphosphatase | 68 | 78 | 1.00E-116 | 417 | R. cap, R. cap | 193(13),99() |
| 23 | cbbM | 2 | RuBP carboxylase | 30 | 44 | 7.00E-30 | 132 | S. mel, R. cap | 193(16),99() |
| 24 | cbbG | 3 | Glyceraldehyde-3P-dehydrogenase | 46 | 63 | 1.00E-71 | 271 | P.den, R. cap, P. den | 169(61),195(72),99() |
| 25 | cbbT | 2 | Transketolase | 58 | 69 | 0 | 714 | R. cap, S. mel | 169(58),99() |
| 26 | fruK | 2 | Fructose phosphate kinase | 32 | 42 | 1.00E-22 | 101 | X. cam, M. tub | 156(69),170(46) |
| OXIDOREDUCTASES | |||||||||
| 27 | qoxA | 2 | Quinol oxidase | 45 | 60 | 1.00E-179 | 629 | B. sub, B. sub | 174(36),121(38) |
| 28 | nqoC | 2 | NADH ubiquinone oxidoreductase | 37 | 54 | 2.00E-39 | 165 | P. den, T. aqa | 118(33),42(2) |
| 29 | nuoI | 2 | NADH ubiquinone oxidoreductase | 43 | 55 | 4.00E-24 | 111 | R. cap, E. coli | 118(28),48(6) |
| 30 | qor | 2 | NADPH quinone oxidoreductase | 22 | 37 | 0.086 | 39 | R. gel, E. coli | 123(31),131(30) |
| 31 | nuoH | 2 | NADH quinone oxidireductase | 41 | 60 | 1.00E-56 | 221 | R. cap, E. coli | 118(27),48(4) |
| 32 | rdxA,B | 2 | RDX protein | 67 | 79 | 0 | 650 | R. cap, R. cap | 194(73), 182(97) |
| 33 | ordL | 5 | probable oxidoreductase | 32 | 47 | 1.00E-43 | 171 | H. inf, S. coe, H. inf, E. coli, S. coe | 194(125),166(30),173(9),141(48),175(7) |
| 34 | coxL | 3 | Carbon monoxide dehydrogenase (L subunit) | 29 | 45 | 4.00E-39 | 159 | D.rad, A.aeo, Aeropyrum pernix | 152(2),154(67),184(20) |
| 35 | coxS | 3 | Carbon monoxide dehydrogenase (S subunit) | 46 | 59 | 2.00E-31 | 129 | G. eur, Ps. the, D. rad | 154(66),184(118),53(3) |
| 36 | mocC | 2 | Aryl-alcohol dehydrogenase | 25 | 38 | 4.00E-10 | 60 | S. coe, A.tum | 168(92),154(38) |
| 37 | RP416 | 3 | Fe-S oxidoreductase | 30 | 46 | 6.00E-26 | 113 | E. coli, R. pro | 171(41),137(21),189(76) |
| CHEMOTAXIS | |||||||||
| 38 | cheA | 4 | chemotaxis histidine kinase | 34 | 47 | 4.00E-77 | 290 | C. cre, B. bur, C. cre, T. den | 132(25),159(27),162(5,12) |
| 39 | cheB | 3 | MCP-glutamate methylesterase | 40 | 52 | 9.00E-56 | 218 | E. coli, C. cre, R. cen | 159(31),162(7,11) |
| 40 | cheR | 3 | MCP-glutamate methyltransferase | 35 | 52 | 2.00E-33 | 143 | A. tum, E. coli, V. par | 132(27),159(30),162(6) |
| 41 | cheW | 4 | chemotaxis scaffold protein | 33 | 55 | 9.00E-13 | 73 | S. mel, E. coli, D. gig, P. put | 132(26),162(8),159(28,29) |
| 42 | cheY | 5 | chemotaxis response regulator | 69 | 82 | 1.00E-42 | 172 | S. mel, C. cre, S. mel, C. cre | 159(26),132(18,24,28) |
| 43 | tlp | 4 | transducer like protein | 24 | 39 | 5.00E-26 | 120 | R. sph, P. aer, C. the | 159(32),132(20),162(10) |
| 44 | mcp | 7 | chemorecptor protein | 42 | 62 | 3.00E-67 | 257 | D. gig, D. vul, D. gig, R. leg | 112(1),119(22),132(19,21) |
| REPLICATION & PARTITIONING | |||||||||
| 45 | repA | 4 | replication A protein | 29 | 48 | 4.00E-39 | 163 | S. mel A. tum (plasmid), R. leg, R. leg | 183(114),188(81),195(181),175(49) |
| 46 | repB | 3 | replication B protein | 34 | 49 | 5.00E-31 | 135 | P. ver, R. leg, P. ver | 195(1820,175(50),183(115) |
| 47 | parA | 3 | ParA protein | 29 | 47 | 1.00E-13 | 77 | Rhizobium sp., C. cre, T. the | 191(95),193(67),162(9) |
| 48 | parB | 3 | plasmid stabilization protein | 97 | 98 | 1.00E-147 | 522 | S. aro, S. aro, S. aro | 106(14),130(56),137(13) |
| 49 | dnaE | 2 | DNA polymerase III, alpha subunit | 31 | 48 | 1.00E-87 | 319 | P. flu, M. tub | 139(36),158(48) |
| TRANSPORT SYSTEM | |||||||||
| 50 | smoM | 2 | mannitol bonding protein | 25 | 41 | 2.00E-12 | 68 | R.sph, R. sph | 170(60),138(20) |
| 51 | expE1 | 4 | Calcium binding protein | 32 | 44 | 1.00E-27 | 125 | M. ext, M. ext, M. ext | 120(110,158(56),158(11) |
| 52 | dctP | 2 | dicarboxylate binding protein | 26 | 47 | 9.00E-15 | 82 | R. cap, H. inf | 133(20),133(20) |
| REGULATORS | |||||||||
| 53 | gntR | 2 | transcriptional regulator | 31 | 45 | 1.00E-08 | 61 | D. rad, S. coe | 112(19),112(23) |
| 54 | fnrL | 2 | Anaerobic (FnrL) Regulator | 32 | 51 | 4.00E-26 | 119 | R. cap, R. cap | 194(67),192(157) |
| 55 | rpoN | 4 | Sigma factor | 41 | 56 | 4.00E-69 | 263 | R. cap, R. cap | 102(8),137(36) |
| 56 | dctD | 2 | dicarboxylate transport regulator | 35 | 47 | 4.00E-61 | 229 | S. mel | 164(57),134(7) |
| 57 | dctB | 2 | dicarboxylate sensor kinase | 30 | 50 | 3.00E-17 | 91 | R. cap. S. mel | 133(33),134(6) |
| LIPID METABOLISM | |||||||||
| 58 | ech | 3 | Enoyl -CoA hydratase | 33 | 44 | 3.00E-15 | 83 | M. tub, D. rad, M. tub | 115(15),131(28),133(30) |
| AMINO ACID METABOLISM | |||||||||
| 59 | glnA | 4 | Glutamine synthase | 27 | 39 | 2.00E-26 | 115 | M.tub, E.coli, E. coli, R. sph | 170(61),141(450,109(57),177(90) |
| 60 | trpB | 2 | Tryptophan synthase,B subunit | 45 | 62 | 2.00E-97 | 350 | B. stearothermophilus, R. sph | 172(101),141(12) |
| 61 | serA | 3 | Phosphoglycerate dehydrogenase | 39 | 55 | 1.00E-44 | 175 | B.sub, S. coe, M. tub | 153(32), 155(64),112(20) |
| TRANSPOSONS | |||||||||
| 62 | y4bF | 6 | putative transposase | 78 | 79 | 2.00E-42 | 166 | Rhizobium sp. | 157(36),171(24),146(15),34(),87(),175() |
| HEAT SCHOCK PROTEIN | |||||||||
| 63 | groES | 2 | HSP10 (GroES) | 37 | 57 | 8.00E-04 | 37 | R.sph, R.sph | 170(17),113(42) |
| 64 | groEl | 3 | HSP60 (GroEL) | 45 | 63 | 1.00E-121 | 429 | R.sph, R.sph, B. srearothermophilus | 113(42),170918),187(86) |
| 65 | cspA | 2 | cold shock protein | 88 | 95 | 3.00E-29 | 125 | S. mel, S. mel | 113(18),113(28) |
| 66 | cspB | 3 | cold shock protein | 89 | 96 | 2.00E-32 | 130 | Rhizobium sp. | 178(35),113(),165(4) |
| OTHERS | |||||||||
| 67 | atpA | 2 | ATP synthase, alpha subunit | 31 | 46 | 1.00E-16 | 81 | Moorella thrmoacetica | 171(19),176(54) |
| 68 | atpB | 2 | ATP synthase, beta subunit | 48 | 64 | 1.00E-121 | 429 | Pylaiella littoralis, R. cap | 171(15),170(9) |
| 69 | atpC | 2 | vacuolar/archael ATP synthase, K subunit | 48 | 61 | 6.00E-04 | 37 | Methanosarcina barkeri, R. cap | 171(20),176(55) |
| 70 | hemA,T | 2 | 5-Aminolevulinic acid synthase | 54 | 70 | 1.00E-119 | 430 | R. cap, R. cap | 169(11), 182(22) |
| 71 | hem | 4 | Coproporphyrinogen III oxidase | 24 | 46 | 3.00E-13 | 77 | P. den, R. pro, S. pom, P. den | 168(31),193(207),194(81,242) |
| 72 | metEX | 3 | hypothetical protein | 96 | 97 | 5.00E-66 | 249 | S. aro, S. aro, S. aro | 106(13),130(455),158(110) |